Publications

 

2014

Advancing a Framework to Enable Characterization and Evaluation of Data Streams Useful for Biosurveillance

Margevicius KJ, Generous N, Taylor-McCabe KJ, Brown M, Daniel WB, Castro L, Hengartner A, Deshpande A

Inferring the Origin Locations of Tweets with Quantitative Confidence

Priedhorsky R, Culotta A, Del Valle AY

Selecting Essential Information for Biosurveillance-A Multi-Criteria Decision Analysis

Generous N, Margevicius KJ, Taylor-McCabe KJ, Brown M, Daniel WB, Castro L, Hengartner A, Deshpande A

Global Disease Monitoring and Forecasting with Wikipedia

Generous N, Fairchild F, Deshpande A, Del Valle S, Priedhorsky R

Detection of the urban release of Bacillus anthracis simulant by air sampling

Garza A, Van Cuyk S, Brown M, Omberg K

The Surveillance Window - An Evaluation Method for Identifying Data Streams for Early Warning and Detection of Infectious Diseasae Outbreaks

Taylor-McCabe KJ, Castro LA, Generous N, Margevicius KJ, Brown M, Deshpande A

Forecasting the 2013-2014 Influenza Season using Wikipedia (Pre-print)

Hickmann KS, Fairchild G, Priedhorsky R, Generous N, Hyman JM, Deshpande A, Del Valle S

Comparing Dengue and Chikungunya Emergence and Endemic Transmission in A. aeypti and A. albopictus

Manore CA, HIckmann KS, Xu S, Weaving HJ, Hyman JM

A Network-Patch Methodology for Adapting Agent-Based Models for Directly Transmitting Disease to Mosquite-Borne Disease (Pre-print)

Manore CA, Hickmann KS, Hyman JM, Foppa IM, Davis JK, Wesson DM, Mores CN

Understanding the Impact of Face Mask Usage Through Epidemic Simulation of Large Social Networks

Mniszewski SM, Del Valle SY, Priedhorsky R, Hyman JM, Hickmann KS

Crowdsourcing rare events: Using curiosity to draw participants into science and early warning systems

Tapia AH, LaLone N, MacDonald E, Priedhorsky R, Hall M

Quantifying the impact of decay in bed-net efficacy on malaria transmission

Ngonghala CN, Del Valle SY, Zhao R, Mohammed-Awel J

Detection of stealthy small amphiphilic biomarkers

Sakamuri RM, Capek P, Dickerson TJ, Barry CE, Mukundan H, Swanson BI

2013

An epidemiological model of spatial coupling for trips longer than the infectious period

Daniel WB, Hengartner NW, Rivera MK, Powell DR, McPherson TN

Optimizing human activity patterns using global sensitivity analysis

Fairchild G, Hickmann KS, Mniszewski SM, Del Valle SY, Hyman JM

How many suffice? A computational framework for sizing sentinel surveillance networks

Fairchild G, Polgreen PM, Foster E, Rushton G, Segre AM

Detecting laboratory DNA contamination using polyester-rayon wipes: A method validation study

Remillard M, Taylor LK, Layshock J, Van Cuyk S, Omberg K

A Systematic Evaluation of Traditional and Non-Traditional Data Streams for Integrated Biosurveillance

Deshpande A, Brown M, Castro LA, Daniel WB, Generous EN, Hengartner A, Longo JF, Margevicius KJ, McCabe KJ, Parliman ZA

Mathematical models of contact patterns between age groups for predicting the spread of infectious diseases

Del Valle SY, Hyman JM, Chitnis N

The impact of bed-net use on malaria prevalence

Agusto FB, Del Valle SY, Blayneh KW, Ngonghala CN, Goncalves MJ, Nianpeng L, Ruijun Z, Gong H

Modeling the impact of behavior changes on the spread of pandemic influenza

Del Valle SY, Mniszewski SM, Hyman JM

Novel optical strategies for biodetection

Sakamuri RM, Wolfenden MS, Anderson AS, Swanson BI, Schmidt JS, Mukundan H

Integration of hyperspectral imagery and biosensors for biological and chemical facility classification

Munsky B, Yeager JD, Sellars S, Mukundan H, Nadler BR

2012

Developing Tools to Combat Emerging Infectious Diseases

Mukundan H

Primary stroke centers should be located using maximal coverage models for optimal access

Leira EC, Fairchild G, Segre AM, Rushton G, Froehler MT, Polgreen PM

Detection and tracking of a novel genetically tagged biological simulant in the environment

Emmanuel P, Edmonds J, Sutton T, Ginley W, Keiser C, Doherty R, Kim M, Kragl J, Buckley P, Bailey A, Rastogi V, Paikoff S, Leppert S, Strawbridge J, INsalac J, Ziernski M, Harvey S, Hirsch E, Bieschke KM, Harris CL, Omberg K, Van Cuyk, Gibbons SS

Reaerosolization of Bacillus spp. in Outdoor Environments: A Review of the Experimental Literature

Layshock J, Pearson B, Crockett K, Brown M, Van Cuyk S, Daniel WB, Omberg, K

Transport of Bacillus thuringiensis var. kurstaki from an outdoor release into buildings: Pathways of infiltration and a rapid method to identify contaminated buildings

Van Cuyk S, Deshpande A, Hollander A, Duvall N, Ticknor L, Gallegos-Graves L, Omberg K

Economic analysis of the use of facemasks during the pandemic

Tracht SM, Del Valle SY, Edwards BK

Mixing in age-structured population models of infectious diseases

Glasser J, Feng Z, Moylan A, Del Valle SY, Castillo-Chavez C

Rapid phlylogenetic and functional classification of short genomic fragments with signature peptides

Berendzen J, Bruno WJ, Cohn JD, Hengartner NW, Kuske CR, McMahon BH, Wolinksy MA, and Xie G

Using Phage and Yeast Display to Select Hundreds of Monoclonal Antibodies: Application to Antigen 85, a Tuberculosis Biomarker

Ferrara F, Naranjo LA, Kumar S, Gaiotto T, Swanson BI, Mukundan H, Bradbury AS

Waveguide Biosensors for Medical Diagnostics

Mukundan H

2011

Transport of Bacillus thuringiensis var. kurstaki via fomites

Van Cuyk S, Simpson B, Veal LA, Omberg K

Persistance of Bacillus thuringiensis var. kurstaki in the urban environments following spraying

Van Cuyk S, Deshpande A, Hollander A, Duvall N, Ticknor, Gallegos-Graves L, Omberg K

Quantifying how social mixing patterns affect disease transmission

Del Valle SY, Hyman JM, Le Gressey S

Developing novel biosensing approaches for emerging infectious agents

Mukundan H

2010

Quantitative Multiplex Detection of Pathogen Biomarkers on Multichannel Waveguides

Mukundan H, Xie H, Price D, Kubicek-Sutherland J, Anderson AS, Martinez JS, Grace WK, Hartman N, Swanson BI

Can we reduce the spread of influenza in schools with face masks?

Del Valle SY, Tellier R, Settles GS, Tang JW

Mathematical modeling of the effectiveness of facemasks in reducing the spread of novel influenza A (H1N1)

Tracht SM, Del Valle SY, Hyman JM

2009

Waveguide-based Sensors for Pathogen Detection

Mukundan HAnderson AS, Grace WK, Grace K, Hartman N, Martinez JS, Swanson BI

Photostable Multiplex Analyte Detection on Single Mode Planar Optical Waveguides

Mukundan HXie H, Anderson AS, Grace WK, Price D, Swanson BI

Robust Sensing Films for Pathogen Detection and Medical Diagnostics

Anderson AS, Dattelbaum A, Mukundan H, Grace WK, Swanson BI

2008

Detection of Intact Influenza Viruses using Biotinylated Biantennary S-Sialosides

Kale R, Mukundan H, Price D, Foster-Harris J, Lewallen DM, Swanson BI, Schmidt JG, Iyer SS

Pandemic simulation of antrivirals and school closures: buying time until strain specific vaccine is availabe

Mniszewski SM, Del Valle SY, Stroud PD, Riese JM, Sydoriak SJ

EpiSimS simulation of a multi-component strategy for pandemic influenza

Mniszewski SM, Del Valle SY, Stroud PD, Riese JM, Sydoriak SJ

2007

Estimating the reproduction number from the initial phase of the Spanish Flu pandemic waves in Geneva, Switzerland

Chowell G, Ammon CE, Hengartner NW, Hyman JM

Spatial dynamics of pandemic influenza in a massive artificial society

Stroud PD, Del Valle SY, Sydoriak SJ, Riese JM, Mniszewski SM

Mixing Patterns between age groups in social networks

Del Valle SY, Hyman JM, Hethcote HW, Eubank SG

2006

Critical response to post-outbreak vaccination against foot-and-mouth disease

Chowell G, Rivas AL, Hengartner NW, Hyman JM, Castillo-Chavez C

The role of spatial mixing in the spread of foot-and-mouth disease

Chowell G, Rivas AL, Hengartner NW, Hyman JM, Castillo-Chavez C

Transmission dynamics of the great infuenza pandemic of 1918 in Geneva, Switzerland: Assessing the effects of hypothetical interventions

Chowell G, Ammon CE, Hengartner NW, Hyman JM

Accounting for Seasonal Patterns in Syndromic Surveillance Data for Outbreak Detection

Burr T, Graves T, Klamann R, Michalak S, Picard R, Hengartner NW

EpiSimS Los Angeles Case Study

Del Valle SY, Kubicek D, Mniszewski SM, Riese JM, Romero PR, Smith JP, Stroud PD, Sydoriak SJ

Mathematical applications associated with the deliberate release of infectious agents

Chowell G, Cintroon-Arias A, Del Valle SY, Sanchez G, Sung B, Hyman JM, Hethcote HW, Castillo-Chavez C

EpiSimS: epidemic simulation system

Del Valle SY, Stroud PD, Smith JP, Mniszewski SM, Riese JM, Sydoriak SJ, Kubicek DA

2005

Effects of behavioral changes in a smallpox attack model

Del Valle SY, Hethcote H, Hyman JM, Castillo-Chavez C

2004

The basic reproductive number and the effects on public heallth measures: the cases of Congo and Uganda

Chowell G, Hengartner NW, Castillo-Chavez C, Fenimore PW, Hyman JM

2003

Detection of Eschericia coli using Immunomagnetic Separation and Bacteriophage Amplification Coupled with Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Mass Spectrometry

Madonna AJ, Van Cuyk S, Voorhees KJ